control non-treated treated  -30-25-20-15-10-5-1151015202530 
Reference  224065 195093 209175  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
no variant   219656 147962 169373  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-2:6D   3 3720 4007  TTGTGGAGAAGGTGCTAGACAGGCGCGT------GGGACAAGTGGAATATCTACTGAAGT 
   
-2:1D   75 4494 2590  TTGTGGAGAAGGTGCTAGACAGGCGCGT-GTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-2:7D   4 2854 1943  TTGTGGAGAAGGTGCTAGACAGGCGCGT-------GGACAAGTGGAATATCTACTGAAGT 
   
-2:1I   1 2306 1656  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:2D   1 2726 1228  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG--AAGGGACAAGTGGAATATCTACTGAAGT 
   
1:1I   5 2221 1520  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-4:3D   1 2019 810  TTGTGGAGAAGGTGCTAGACAGGCGC---GTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-1:12D   1 1331 1172  TTGTGGAGAAGGTGCTAGACAGGCGCGTG------------GTGGAATATCTACTGAAGT 
   
-4:15D   8 1122 1302  TTGTGGAGAAGGTGCTAGACAGGCGC---------------GTGGAATATCTACTGAAGT 
   
-13:19D   0 915 1176  TTGTGGAGAAGGTGCTA-------------------GACAAGTGGAATATCTACTGAAGT 
   
Other   1 201 1550   
   
-1:5D   0 877 675  TTGTGGAGAAGGTGCTAGACAGGCGCGTG-----GGGACAAGTGGAATATCTACTGAAGT 
   
SNV:-3   632 418 464  TTGTGGAGAAGGTGCTAGACAGGCGCGSGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-10:10D   0 870 582  TTGTGGAGAAGGTGCTAGAC----------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
SNV:4   551 374 412  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAKGGGACAAGTGGAATATCTACTGAAGT 
   
1:2I   0 677 628  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-2:2D   0 823 377  TTGTGGAGAAGGTGCTAGACAGGCGCGT--TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
SNV:1   411 340 341  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGCTAAGGGACAAGTGGAATATCTACTGAAGT 
   
SNV:3   364 262 332  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTGAGGGACAAGTGGAATATCTACTGAAGT 
   
-4:4D   0 455 502  TTGTGGAGAAGGTGCTAGACAGGCGC----TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-13:12D   0 475 456  TTGTGGAGAAGGTGCTA------------GTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:9D   0 558 340  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG---------AAGTGGAATATCTACTGAAGT 
   
-6:5D   1 512 382  TTGTGGAGAAGGTGCTAGACAGGC-----GTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:8D   0 418 441  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG--------CAAGTGGAATATCTACTGAAGT 
   
SNV:-8   372 223 249  TTGTGGAGAAGGTGCTAGACAGWCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:1D   86 382 360  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG-TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-10:13D   0 406 400  TTGTGGAGAAGGTGCTAGAC-------------AGGGACAAGTGGAATATCTACTGAAGT 
   
-1:2D   1 624 179  TTGTGGAGAAGGTGCTAGACAGGCGCGTG--TAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:4D   0 481 264  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG----GGGACAAGTGGAATATCTACTGAAGT 
   
SNV:2   294 228 216  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTCAAGGGACAAGTGGAATATCTACTGAAGT 
   
-3:4D   1 428 234  TTGTGGAGAAGGTGCTAGACAGGCGCG----TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-5:13D   0 390 263  TTGTGGAGAAGGTGCTAGACAGGCG-------------CAAGTGGAATATCTACTGAAGT 
   
SNV:-7   257 188 191  TTGTGGAGAAGGTGCTAGACAGGWGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
SNV:-6   211 168 166  TTGTGGAGAAGGTGCTAGACAGGCACGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:3D   0 296 216  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG---AGGGACAAGTGGAATATCTACTGAAGT 
   
SNV:-5   170 137 184  TTGTGGAGAAGGTGCTAGACAGGCGTGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-6:6D   0 343 148  TTGTGGAGAAGGTGCTAGACAGGC------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
SNV:-1   116 203 148  TTGTGGAGAAGGTGCTAGACAGGCGCGTGWTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-2:13D   0 185 249  TTGTGGAGAAGGTGCTAGACAGGCGCGT-------------GTGGAATATCTACTGAAGT 
   
SNV:-2   195 110 115  TTGTGGAGAAGGTGCTAGACAGGCGCGTAGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-1:3I   0 258 153  TTGTGGAGAAGGTGCTAGACAGGCGCGTGSTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:10D   1 290 105  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG----------AGTGGAATATCTACTGAAGT 
   
-6:12D   1 151 227  TTGTGGAGAAGGTGCTAGACAGGC------------GACAAGTGGAATATCTACTGAAGT 
   
SNV:5   175 79 118  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAAGGACAAGTGGAATATCTACTGAAGT 
   
SNV:-4   146 103 109  TTGTGGAGAAGGTGCTAGACAGGCGCATGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-2:8D   0 184 167  TTGTGGAGAAGGTGCTAGACAGGCGCGT--------GACAAGTGGAATATCTACTGAAGT 
   
1:11D   0 151 179  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG-----------GTGGAATATCTACTGAAGT 
   
-14:24D   0 111 198  TTGTGGAGAAGGTGCT------------------------AGTGGAATATCTACTGAAGT 
   
-7:15D   0 100 201  TTGTGGAGAAGGTGCTAGACAGG---------------CAAGTGGAATATCTACTGAAGT 
   
-4:8D   0 68 222  TTGTGGAGAAGGTGCTAGACAGGCGC--------GGGACAAGTGGAATATCTACTGAAGT 
   
-9:8D   0 194 93  TTGTGGAGAAGGTGCTAGACA--------GTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-10:12D   0 129 148  TTGTGGAGAAGGTGCTAGAC------------AAGGGACAAGTGGAATATCTACTGAAGT 
   
-1:2I   0 128 144  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-11:11D   0 112 156  TTGTGGAGAAGGTGCTAGA-----------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-6:17D   0 126 130  TTGTGGAGAAGGTGCTAGACAGGC-----------------GTGGAATATCTACTGAAGT 
   
-13:13D   0 204 49  TTGTGGAGAAGGTGCTA-------------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-15:15D   0 143 107  TTGTGGAGAAGGTGC---------------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-9:14D   0 132 114  TTGTGGAGAAGGTGCTAGACA--------------GGACAAGTGGAATATCTACTGAAGT 
   
-22:24D   0 157 88  TTGTGGAG------------------------AAGGGACAAGTGGAATATCTACTGAAGT 
   
-15:16D   0 142 89  TTGTGGAGAAGGTGC----------------TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-14:17D   0 67 160  TTGTGGAGAAGGTGCT-----------------AGGGACAAGTGGAATATCTACTGAAGT 
   
-2:2I   0 111 110  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-26:1D   87 74 57  TTGT-GAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-1:1I   0 104 105  TTGTGGAGAAGGTGCTAGACAGGCGCGTGKTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-12:21D   0 109 98  TTGTGGAGAAGGTGCTAG---------------------AAGTGGAATATCTACTGAAGT 
   
-5:15D   0 112 95  TTGTGGAGAAGGTGCTAGACAGGCG---------------AGTGGAATATCTACTGAAGT 
   
-6:19D   0 55 147  TTGTGGAGAAGGTGCTAGACAGGC-------------------GGAATATCTACTGAAGT 
   
-9:9D   0 79 119  TTGTGGAGAAGGTGCTAGACA---------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-10:44D   0 31 165  TTGTGGAGAAGGTGCTAGAC---------------------------------------- 
   
1:3I   0 180 14  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-6:13D   0 105 88  TTGTGGAGAAGGTGCTAGACAGGC-------------ACAAGTGGAATATCTACTGAAGT 
   
-1:14D   0 75 111  TTGTGGAGAAGGTGCTAGACAGGCGCGTG--------------GGAATATCTACTGAAGT 
   
-10:9D   0 77 103  TTGTGGAGAAGGTGCTAGAC---------KTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-10:20D   0 84 86  TTGTGGAGAAGGTGCTAGAC--------------------AGTGGAATATCTACTGAAGT 
   
-4:10D   0 66 104  TTGTGGAGAAGGTGCTAGACAGGCGC----------GACAAGTGGAATATCTACTGAAGT 
   
-12:14D   0 146 18  TTGTGGAGAAGGTGCTAG--------------AAGGGACAAGTGGAATATCTACTGAAGT 
   
-13:18D   0 91 69  TTGTGGAGAAGGTGCTA------------------GGACAAGTGGAATATCTACTGAAGT 
   
-4:5D   0 109 50  TTGTGGAGAAGGTGCTAGACAGGCGC-----TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-4:2D   0 90 66  TTGTGGAGAAGGTGCTAGACAGGCGC--GSTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-14:14D   0 103 51  TTGTGGAGAAGGTGCT--------------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-1:4I   0 117 35  TTGTGGAGAAGGTGCTAGACAGGCGCGTGSTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-9:15D   0 62 87  TTGTGGAGAAGGTGCTAGACA---------------GACAAGTGGAATATCTACTGAAGT 
   
-1:3D   0 50 97  TTGTGGAGAAGGTGCTAGACAGGCGCGTG---AAGGGACAAGTGGAATATCTACTGAAGT 
   
-17:16D   0 83 61  TTGTGGAGAAGGT----------------GTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-4:6D   0 96 46  TTGTGGAGAAGGTGCTAGACAGGCGC------AAGGGACAAGTGGAATATCTACTGAAGT 
   
-10:11D   0 61 76  TTGTGGAGAAGGTGCTAGAC-----------TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-11:76D   0 28 109  TTGTGGAGAAGGTGCTAGA----------------------------------------- 
   
-5:8D   0 125 9  TTGTGGAGAAGGTGCTAGACAGGCG--------AGGGACAAGTGGAATATCTACTGAAGT 
   
-6:74D   0 6 128  TTGTGGAGAAGGTGCTAGACAGGC------------------------------------ 
   
-19:30D   0 71 61  TTGTGGAGAAG------------------------------GTGGAATATCTACTGAAGT 
   
-1:4D   0 85 45  TTGTGGAGAAGGTGCTAGACAGGCGCGTG----AGGGACAAGTGGAATATCTACTGAAGT 
   
-12:22D   0 111 12  TTGTGGAGAAGGTGCTAG----------------------AGTGGAATATCTACTGAAGT 
   
-6:11D   0 28 91  TTGTGGAGAAGGTGCTAGACAGGC-----------GGACAAGTGGAATATCTACTGAAGT 
   
-4:17D   0 49 67  TTGTGGAGAAGGTGCTAGACAGGCGC-----------------GGAATATCTACTGAAGT 
   
2:2D   0 83 26  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGT--AGGGACAAGTGGAATATCTACTGAAGT 
   
-2:12D   0 83 26  TTGTGGAGAAGGTGCTAGACAGGCGCGT------------AGTGGAATATCTACTGAAGT 
   
-6:7D   0 52 56  TTGTGGAGAAGGTGCTAGACAGGC-------TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-9:7D   0 14 92  TTGTGGAGAAGGTGCTAGACA-------GGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:16D   2 60 43  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG----------------ATATCTACTGAAGT 
   
-10:17D   0 39 57  TTGTGGAGAAGGTGCTAGAC-----------------ACAAGTGGAATATCTACTGAAGT 
   
3:1D   32 29 30  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTT-AGGGACAAGTGGAATATCTACTGAAGT 
   
-11:12D   0 43 47  TTGTGGAGAAGGTGCYAGA------------TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-14:21D   2 34 53  TTGTGGAGAAGGTGCT---------------------ACAAGTGGAATATCTACTGAAGT 
   
-4:32D   0 28 59  TTGTGGAGAAGGTGCTAGACAGGCGC--------------------------------GT 
   
-4:9D   0 86 0  TTGTGGAGAAGGTGCTAGACAGGCGC---------GGACAAGTGGAATATCTACTGAAGT 
   
2:5D   0 72 12  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGT-----RACAAGTGGAATATCTACTGAAGT 
   
-20:18D   0 72 11  TTGTGGAGAA------------------GGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:40I   0 63 19  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
2:7D   0 17 64  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGT-------CAAGTGGAATATCTACTGAAGT 
   
-38:43D   0 14 65  -----------------------------------GGACAAGTGGAATATCTACTGAAGT 
   
-1:41I   0 76 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-5:6D   0 63 12  TTGTGGAGAAGGTGCTAGACAGGCG------TAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:13D   0 34 41  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG-------------GGAATATCTACTGAAGT 
   
-12:34D   0 0 73  TTGTGGAGAAGGTGCTAG----------------------------------ACTGAAGT 
   
-31:30D   0 10 63  -----------------------------GTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-4:12D   0 32 39  TTGTGGAGAAGGTGCTAGACAGGCGC------------CAAGTGGAATATCTACTGAAGT 
   
-1:10D   0 26 45  TTGTGGAGAAGGTGCTAGACAGGCGCGTG----------AAGTGGAATATCTACTGAAGT 
   
1:41I   0 61 9  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:17D   0 51 16  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG-----------------TATCTACTGAAGT 
   
-18:19D   0 43 24  TTGTGGAGAAGG-------------------TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-12:15D   0 54 13  TTGTGGAGAAGGTGCTAG---------------AGGGACAAGTGGAATATCTACTGAAGT 
   
-22:31D   0 6 61  TTGTGGAG-------------------------------AAGTGGAATATCTACTGAAGT 
   
-4:3I   0 5 62  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-3:4I   0 15 49  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
14:1D   15 16 32  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGT-GAATATCTACTGAAGT 
   
SNV:-1,1   0 21 41  TTGTGGAGAAGGTGCTAGACAGGCGCGTGTSTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-48:51D   0 0 62  ---------------------------------AGGGACAAGTGGAATATCTACTGAAGT 
   
-1:91D   0 1 61  TTGTGGAGAAGGTGCTAGACAGGCGCGTG------------------------------- 
   
-3:13D   0 37 24  TTGTGGAGAAGGTGCTAGACAGGCGCG-------------AGTGGAATATCTACTGAAGT 
   
2:8D   0 29 32  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGT--------AAGTGGAATATCTACTGAAGT 
   
2:6D   0 24 37  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGT------ACAAGTGGAATATCTACTGAAGT 
   
-2:10D   0 30 29  TTGTGGAGAAGGTGCTAGACAGGCGCGT----------CWAGTGGAATATCTACTGAAGT 
   
-17:23D   0 58 1  TTGTGGAGAAGGT-----------------------GACAAGTGGAATATCTACTGAAGT 
   
-12:13D   0 51 7  TTGTGGAGAAGGTGCTAG-------------TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-4:2I   0 9 47  TTGTGGAGAAGGTGCTAGACAGGCGCGTGKTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-3:11D   0 56 0  TTGTGGAGAAGGTGCTAGACAGGCGCG-----------CAAGTGGAATATCTACTGAAGT 
   
-26:31D   2 34 19  TTGT-------------------------------GGACAAGTGGAATATCTACTGAAGT 
   
-27:68D   0 1 54  TTG--------------------------------------------------------- 
   
-16:24D   0 38 16  TTGTGGAGAAGGTG------------------------CAAGTGGAATATCTACTGAAGT 
   
-18:90D   0 0 53  TTGTGGAGAAGG------------------------------------------------ 
   
1:4I   0 52 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-1:39I   0 35 17  TTGTGGAGAAGGTGCTAGACAGGCGCGTGRTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
16:1D   14 8 30  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGG-ATATCTACTGAAGT 
   
-20:25D   0 10 42  TTGTGGAGAA-------------------------GGACAAGTGGAATATCTACTGAAGT 
   
-9:84D   0 1 50  TTGTGGAGAAGGTGCTAGACA--------------------------------------- 
   
-23:22D   0 15 35  TTGTGGA----------------------GTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-22:55D   0 0 49  TTGTGGAG---------------------------------------------------- 
   
-19:23D   0 1 47  TTGTGGAGAAG-----------------------GGGACAAGTGGAATATCTACTGAAGT 
   
-47:52D   0 3 44  -----------------------------------GGACAAGTGGAATATCTACTGAAGT 
   
-14:23D   0 10 37  TTGTGGAGAAGGTGCT-----------------------AAGTGGAATATCTACTGAAGT 
   
-17:28D   0 22 25  TTGTGGAGAAGGT----------------------------GTGGAATATCTACTGAAGT 
   
-13:14D   0 17 30  TTGTGGAGAAGGTGCTA--------------TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-3:27D   0 16 29  TTGTGGAGAAGGTGCTAGACAGGCGCG---------------------------TGAAGT 
   
2:15D   0 8 37  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGT---------------ATATCTACTGAAGT 
   
1:39I   0 40 5  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:65D   0 0 45  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG------------------------------ 
   
2:1I   0 44 1  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-6:20D   1 41 2  TTGTGGAGAAGGTGCTAGACAGGC--------------------GAATATCTACTGAAGT 
   
-6:8D   0 41 3  TTGTGGAGAAGGTGCTAGACAGGC--------AAGGGACAAGTGGAATATCTACTGAAGT 
   
-39:42D   0 6 37  ---------------------------------AGGGACAAGTGGAATATCTACTGAAGT 
   
-8:12D   0 41 2  TTGTGGAGAAGGTGCTAGACAG------------GGGACAAGTGGAATATCTACTGAAGT 
   
-3:6D   0 39 4  TTGTGGAGAAGGTGCTAGACAGGCGCG------AGGGACAAGTGGAATATCTACTGAAGT 
   
-6:53D   0 0 43  TTGTGGAGAAGGTGCTAGACAGGC------------------------------------ 
   
-18:42D   0 7 36  TTGTGGAGAAGG------------------------------------------TGAAGT 
   
-17:52D   0 0 42  TTGTGGAGAAGGT----------------------------------------------- 
   
-14:26D   0 0 42  TTGTGGAGAAGGTGCT--------------------------TGGAATATCTACTGAAGT 
   
-3:61D   0 0 42  TTGTGGAGAAGGTGCTAGACAGGCGCG--------------------------------- 
   
-8:6D   0 42 0  TTGTGGAGAAGGTGCTAGACAG------GKTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-13:11D   0 22 20  TTGTGGAGAAGGTGCTA-----------GGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-61:61D   0 0 41  ------------------------------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
2:14D   0 11 29  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGT--------------AATATCTACTGAAGT 
   
-1:11D   0 13 27  TTGTGGAGAAGGTGCTAGACAGGCGCGTG-----------WSTGGAATATCTACTGAAGT 
   
-6:42D   0 6 34  TTGTGGAGAAGGTGCTAGACAGGC------------------------------------ 
   
-8:19D   0 28 12  TTGTGGAGAAGGTGCTAGACAG-------------------GTGGAATATCTACTGAAGT 
   
1:5I   0 6 34  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-28:55D   0 0 40  TT-------------------------------------------------------AGT 
   
-4:18D   0 18 22  TTGTGGAGAAGGTGCTAGACAGGCGC------------------GAATATCTACTGAAGT 
   
-2:11D   0 27 13  TTGTGGAGAAGGTGCTAGACAGGCGCGT-----------AAGTGGAATATCTACTGAAGT 
   
-2:9D   0 28 11  TTGTGGAGAAGGTGCTAGACAGGCGCGT---------ACAAGTGGAATATCTACTGAAGT 
   
-3:7D   0 8 31  TTGTGGAGAAGGTGCTAGACAGGCGCG-------GGGACAAGTGGAATATCTACTGAAGT 
   
-5:7D   0 30 9  TTGTGGAGAAGGTGCTAGACAGGCG-------AAGGGACAAGTGGAATATCTACTGAAGT 
   
5:1D   7 12 20  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGWYAA-GKACAAGTGGAATATCTACTGAAGT 
   
-2:7D,12:20D   0 0 38  TTGTGGAGAAGGTGCTAGACAGGCGCGT-------GGACAA------------------- 
   
-27:28D   0 12 26  TTG----------------------------TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-8:2D   4 13 21  TTGTGGAGAAGGTGCTAGACAG--GCGTGKTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-4:7D   0 25 13  TTGTGGAGAAGGTGCTAGACAGGCGC-------AGGGACAAGTGGAATATCTACTGAAGT 
   
-65:65D   0 0 38  ------------------------------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-20:19D   0 18 20  TTGTGGAGAA-------------------GTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-14:22D   0 12 26  TTGTGGAGAAGGTGCT----------------------CAAGTGGAATATCTACTGAAGT 
   
-10:21D   0 20 18  TTGTGGAGAAGGTGCTAGAC---------------------GTGGAATATCTACTGAAGT 
   
-10:15D   0 0 37  TTGTGGAGAAGGTGCTAGAC---------------GGACAAGTGGAATATCTACTGAAGT 
   
1:42I   0 35 2  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-20:20D   0 11 26  TTGTGGAGAA--------------------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-2:3I   0 9 27  TTGTGGAGAAGGTGCTAGACAGGCGCGTRSWYAAGGGACAAGTGGAATATCTACTGAAGT 
   
-10:22D   0 13 23  TTGTGGAGAAGGTGCTAGAC----------------------TGGAATATCTACTGAAGT 
   
2:11D   0 0 36  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGT-----------TGGAATATCTACTGAAGT 
   
-26:89D   0 0 35  TTGT-------------------------------------------------------- 
   
-23:29D   0 18 17  TTGTGGA-----------------------------GACAAGTGGAATATCTACTGAAGT 
   
1:94D   0 0 35  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG------------------------------ 
   
-6:7D,4:3I   0 0 35  TTGTGGAGAAGGTGCTAGACAGGC-------TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-32:61D   0 0 35  -----------------------------------------------------------T 
   
-6:4D   0 16 18  TTGTGGAGAAGGTGCTAGACAGGC----GTTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-15:19D   0 10 24  TTGTGGAGAAGGTGC-------------------GGGACAAGTGGAATATCTACTGAAGT 
   
-1:43D   0 0 34  TTGTGGAGAAGGTGCTAGACAGGCGCGTG------------------------------- 
   
-1:26D   0 7 27  TTGTGGAGAAGGTGCTAGACAGGCGCGTG--------------------------GAAGT 
   
-15:28D   2 13 19  TTGTGGAGAAGGTGC----------------------------GGAATATCTACTGAAGT 
   
-1:5I   0 34 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGSTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-41:46D   10 5 17  -----------------------------------GGACAAGTGGAATATCTACTGAAGT 
   
-2:5D   0 31 1  TTGTGGAGAAGGTGCTAGACAGGCGCGT-----AGGGACAAGTGGAATATCTACTGAAGT 
   
-4:83D   0 0 32  TTGTGGAGAAGGTGCTAGACAGGCGC---------------------------------- 
   
-4:19D   0 0 32  TTGTGGAGAAGGTGCTAGACAGGCGC-------------------AATATCTACTGAAGT 
   
-13:57D   0 0 31  TTGTGGAGAAGGTGCTA------------------------------------------- 
   
-58:58D   0 0 31  ------------------------------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-45:47D   0 0 31  --------------------------------AAGGGACAAGTGGAATATCTACTGAAGT 
   
-4:14D   0 23 7  TTGTGGAGAAGGTGCTAGACAGGCGC--------------WGTGGAATATCTACTGAAGT 
   
1:20D   0 15 15  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG--------------------CTACTGAAGT 
   
-26:19D,-4:4D   0 2 28  TTGT-------------------CCC----TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-14:20D   1 25 4  TTGTGGAGAAGGTGCT--------------------GACAAGTGGAATATCTACTGAAGT 
   
-12:20D   0 10 19  TTGTGGAGAAGGTGCTAG--------------------CAAGTGGAATATCTACTGAAGT 
   
-2:16D   0 28 1  TTGTGGAGAAGGTGCTAGACAGGCGCGT----------------GAATATCTACTGAAGT 
   
-45:48D   0 0 29  ---------------------------------AGGGACAAGTGGAATATCTACTGAAGT 
   
1:43I   0 28 1  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-3:5D   0 19 10  TTGTGGAGAAGGTGCTAGACAGGCGCG-----AAGGGACAAGTGGAATATCTACTGAAGT 
   
-3:4D,4:1I   0 0 29  TTGTGGAGAAGGTGCTAGACAGGCGCG----TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-8:65D   0 0 29  TTGTGGAGAAGGTGCTAGACAG-------------------------------------- 
   
-4:29D   0 9 19  TTGTGGAGAAGGTGCTAGACAGGCGC-----------------------------GAAGT 
   
-4:11D   0 28 0  TTGTGGAGAAGGTGCTAGACAGGCGC-----------ACAAGTGGAATATCTACTGAAGT 
   
-17:17D   0 13 15  TTGTGGAGAAGGT-----------------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-1:7I   0 17 11  TTGTGGAGAAGGTGCTAGACAGGMGYRTGYTKAWGGGACAAGTGGAATATCTACTGAAGT 
   
2:3D   0 16 12  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGT---RGGACAAGTGGAATATCTACTGAAGT 
   
-3:1D   2 21 5  TTGTGGAGAAGGTGCTAGACAGGCGCG-SGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-35:56D   0 0 28  ---------------------------------------------------TACTGAAGT 
   
-1:42I   0 28 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-56:56D   0 0 28  ------------------------------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-28:20D,-4:3D   0 0 27  TT--------------------GCCC---CTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-3:20D   0 9 18  TTGTGGAGAAGGTGCTAGACAGGCGCG--------------------TATCTACTGAAGT 
   
-10:25D   0 8 19  TTGTGGAGAAGGTGCTAGAC-------------------------AATATCTACTGAAGT 
   
-3:1I   0 21 6  TTGTGGAGAAGGTGCTAGACAGGCGCGKGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-24:33D   0 0 27  TTGTGG---------------------------------AAGTGGAATATCTACTGAAGT 
   
-21:21D   0 8 19  TTGTGGAGA---------------------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-2:52D   0 4 23  TTGTGGAGAAGGTGCTAGACAGGCGCGT-------------------------------- 
   
1:7I   0 16 11  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-15:20D   0 0 27  TTGTGGAGAAGGTGC--------------------GGACAAGTGGAATATCTACTGAAGT 
   
-15:14D   0 27 0  TTGTGGAGAAGGTGC--------------STTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-44:87D   0 0 26  ------------------------------------------------------------ 
   
1:45I   0 26 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-10:8D   0 20 6  TTGTGGAGAAGGTGCTAGAC--------GKTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-1:9D   0 26 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTG---------YAAGTGGAATATCTACTGAAGT 
   
-1:35I   0 5 21  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-22:1D   13 5 8  TTGTGGAG-AGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-40:38D   0 0 26  ----------------------------GTTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-12:32D   0 0 25  TTGTGGAGAAGGTGCTAG--------------------------------CTACTGAAGT 
   
-2:17D   0 0 25  TTGTGGAGAAGGTGCTAGACAGGCGCGT-----------------AATATCTACTGAAGT 
   
-9:10D   0 8 16  TTGTGGAGAAGGTGCTAGACA----------TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-15:17D   0 14 10  TTGTGGAGAAGGTGC-----------------AAGGGACAAGTGGAATATCTACTGAAGT 
   
1:49I   0 24 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:22D   0 24 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG----------------------ACTGAAGT 
   
2:10D   0 0 24  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGT----------GTGGAATATCTACTGAAGT 
   
-19:40D,30:15D   0 0 24  TTGTGGAGAAG----------------------------------------AACTTAAG- 
   
-12:16D   0 8 16  TTGTGGAGAAGGTGCTAG----------------GGGACAAGTGGAATATCTACTGAAGT 
   
-19:15D   0 19 4  TTGTGGAGAAG---------------GTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-17:21D   0 23 0  TTGTGGAGAAGGT---------------------GGGACAAGTGGAATATCTACTGAAGT 
   
-24:27D   0 23 0  TTGTGG---------------------------AGGGACAAGTGGAATATCTACTGAAGT 
   
-10:14D   0 8 15  TTGTGGAGAAGGTGCTAGAC--------------GGGACAAGTGGAATATCTACTGAAGT 
   
3:1I   0 6 17  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-1:31I   0 6 17  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-12:31D   0 0 22  TTGTGGAGAAGGTGCTAG-------------------------------GCTACTGAAGT 
   
-35:33D   0 0 22  ----------------------------GGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-11:10D   0 6 16  TTGTGGAGAAGGTGCTARA----------KTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-10:16D   0 11 11  TTGTGGAGAAGGTGCTAGAC----------------KRCAAGTGGAATATCTACTGAAGT 
   
-21:20D   0 0 22  TTGTGGAGA--------------------TTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-4:1D   1 20 1  TTGTGGAGAAGGTGCTAGACAGGCGC-YGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-6:9D,7:12D   0 0 22  TTGTGGAGAAGGTGCTAGACAGGC---------AGG------------CTCTACTGAAGT 
   
1:48I   0 9 13  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGWTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-11:13D   0 6 15  TTGTGGAGAAGGTGCTAGA-------------AAGGGACAAGTGGAATATCTACTGAAGT 
   
2:4D   0 18 3  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGT----GGACAAGTGGAATATCTACTGAAGT 
   
-2:33D   0 21 0  TTGTGGAGAAGGTGCTAGACAGGCGCGT-------------------------------- 
   
-2:44I   0 21 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-22:87D   0 0 21  TTGTGGAG---------------------------------------------------- 
   
-1:18D   0 21 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTG------------------TATCTACTGAAGT 
   
-3:9I   0 0 21  TTGTGGAGAAGGTGCTAGACAGGCGCGTAGACATGGGACAAGTGGAATATCTACTGAAGT 
   
-4:5I,-2:5D,11:3I,16:1D   0 20 0  TTGTGGAGAAGGTGCTAGACAGGCGCGT-----AGAGATAAGTAG-ATATCTACTGAAGT 
   
-8:17D   0 0 20  TTGTGGAGAAGGTGCTAGACAG-----------------CAGTGGAATATCTACTGAAGT 
   
-12:28D   0 0 20  TTGTGGAGAAGGTGCTAG----------------------------ATATCTACTGAAGT 
   
-1:43I   0 20 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-11:17D   0 0 20  TTGTGGAGAAGGTGCTAGA-----------------GACAAGTGGAATATCTACTGAAGT 
   
-1:29I   0 5 15  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-10:23D   0 7 13  TTGTGGAGAAGGTGCTAGAC-----------------------GGAATATCTACTGAAGT 
   
-5:8I,-4:5D   0 0 20  TTGTGGAGAAGGTGCTAGACAGGCGC-----TAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:44I   0 20 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
SNV:-4,-1,1   0 5 14  TTGTGGAGAAGGTGCTAGACAGGCGCYTGTCTAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:24D   0 3 16  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG------------------------TGAAGT 
   
SNV:1,2   1 2 16  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGCGAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:18D   0 5 14  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG------------------ATCTACTGAAGT 
   
-28:24D   0 19 0  TT------------------------GTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:38I   0 19 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-1:33I   0 16 3  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGYTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-10:18D   0 0 19  TTGTGGAGAAGGTGCTAGAC------------------GAAGTGGAATATCTACTGAAGT 
   
1:28I   0 19 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-38:51D   0 0 19  -------------------------------------------GGAATATCTACTGAAGT 
   
SNV:-8,-3   6 7 6  TTGTGGAGAAGGTGCTAGACAGHCGCGSGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-6:22D   0 7 12  TTGTGGAGAAGGTGCTAGACAGGC----------------------MTRTCTACTGAAGT 
   
-29:35D   0 0 18  T-----------------------------------CCCAAGTGGAATATCTACTGAAGT 
   
-4:35D   0 0 18  TTGTGGAGAAGGTGCTAGACAGGCGC---------------------------------- 
   
-5:28D   0 18 0  TTGTGGAGAAGGTGCTAGACAGGCG----------------------------CTGAAGT 
   
-50:36D,-1:37I   1 17 0  ----------------AGACACGCGCCTGCTGAAGGGACAAGTGGAATATCTACTGAAGT 
   
-2:7D,10:1I   0 0 17  TTGTGGAGAAGGTGCTAGACAGGCGCGT-------GGACAAGTGGAATATCTACTGAAGT 
   
-15:18D   0 17 0  TTGTGGAGAAGGTGC------------------AGGGACAAGTGGAATATCTACTGAAGT 
   
2:3D,7:13I   0 0 17  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGT---GGGACAAGTGGAATATCTACYGAAGT 
   
-29:22D,-4:4D   0 0 17  T----------------------CCC----TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-1:40I   0 17 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-2:7I   0 0 17  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGACAAGGGACAAGTGGAATATCTACTGAAGT 
   
-2:6D,27:10I   0 0 17  TYGTGGAGAAGGTGCTAGACAGGCGCGT------GGGACAAGTGGAATATCTACTGAAGT 
   
-1:46I   0 5 12  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-15:25D   0 16 0  TTGTGGAGAAGGTGC-------------------------AGTGGAATATCTACTGAAGT 
   
-4:5D,4:3D   0 16 0  TTGTGGAGAAGGTGCTAGACAGGTGC-----TA---GACAAGTGGAATATCTACTGAAGT 
   
5:2I   0 0 16  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGACAAGGGACAAGTGGAATATCTACTGAAGT 
   
-1:9I   0 0 16  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTGGAGGGACAAGTGGAATATCTACTGAAGT 
   
4:4D   0 7 9  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTWA----ACAAGTGGAATATCTACTGAAGT 
   
-1:27I   0 0 16  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-3:19D   0 16 0  TTGTGGAGAAGGTGCTAGACAGGCGCG-------------------ATATCTACTGAAGT 
   
-1:68D   0 0 16  TTGTGGAGAAGGTGCTAGACAGGCGCGTG------------------------------- 
   
-5:3I,-4:4D   0 0 16  TTGTGGAGAAGGTGCTAGACAGGCGC----TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-8:4D,4:4D,16:7D   0 0 15  TTGTGGAGAAGGTGCTAGACAG----GTGGCCA----CCAGGTGG-------CCTGAAGT 
   
-2:38I   0 0 15  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
2:1I,3:7D   0 15 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTT-------AAGTGGAATATCTACTGAAGT 
   
3:7D   0 0 15  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTT-------AAGTGGAATATCTACTGAAGT 
   
-2:41I   0 4 11  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-3:43I   0 15 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-17:26D   0 7 8  TTGTGGAGAAGGT--------------------------AAGTGGAATATCTACTGAAGT 
   
-9:5D   0 15 0  TTGTGGAGAAGGTGCTAGACA-----GTKGWYAAGKGWCAAGTGGAATATCTACTGAAGT 
   
-8:10D   0 15 0  TTGTGGAGAAGGTGCTAGACAG----------AAGGGACAAGTGGAATATCTACTGAAGT 
   
-6:4D,2:4D   0 0 15  TTGTGGAGAAGGTGCTAGACAGGC----GGT----GGACAAGTGGAATATCTACTGAAGT 
   
1:33D   0 15 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG------------------------------ 
   
-1:6I   0 15 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-15:32D   0 0 15  TTGTGGAGAAGGTGC--------------------------------TATCTACTGAAGT 
   
-11:6D   0 0 15  TTGTGGAGAAGGTGCTAGA------CGACGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-3:14D   0 0 15  TTGTGGAGAAGGTGCTAGACAGGCGCG--------------GTGGAATATCTACTGAAGT 
   
-13:12I   0 15 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-13:44D   0 15 0  TTGTGGAGAAGGTGCTA------------------------------------------- 
   
1:1I,3:7D   0 15 0  TTGTGGAGAAGGTGCTAGACACGCGCCTGGTT-------CAGTGGAATATCTACTGAAGT 
   
-2:24I,1:10I   0 0 15  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-3:2I,-1:20D   0 0 14  TTGTGGAGAAGGTGCTAGACAGGCGCGTG--------------------TCTACTGAAGT 
   
-5:3D   0 3 11  TTGTGGAGAAGGTGCTAGACAGGCG---TGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-36:39D   0 14 0  ---------------------------------AGGGACAAGTGGAATATCTACTGAAGT 
   
-5:16I,-2:5D   0 14 0  TTGTGGAGAAGGTGCTAGACTCGCGCGT-----CCGCACAAGTGGAATATCTACTGAAGT 
   
-6:10D   0 10 4  TTGTGGAGAAGGTGCTAGACAGGC----------GKGACAAGTGGAATATCTACTGAAGT 
   
SNV:-3,4   6 5 3  TTGTGGAGAAGGTGCTAGACAGGCGCGSGGTTAKGGGACAAGTGGAATATCTACTGAAGT 
   
-1:44I   0 14 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
1:8I,3:4I,6:4I,8:15I   0 0 14  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-6:4I,-4:12D   1 13 0  TTGTGGAGAAGGTGCTAGACAGGCCC------------CAAGTGGAATATCTACTGAAGT 
   
-6:5I   0 14 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGKTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-9:18D   0 10 4  TTGTGGAGAAGGTGCTAGACA------------------MAGTGGAATATCTACTGAAGT 
   
-11:18D   0 14 0  TTGTGGAGAAGGTGCTAGA------------------ACAAGTGGAATATCTACTGAAGT 
   
-10:32D   0 0 14  TTGTGGAGAAGGTGCTAGAC--------------------------------ACTGAAGT 
   
-1:48I   0 14 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-7:9I,-6:6D   0 0 13  TTGTGGAGAAGGTGCTAGACAGGC------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-11:1I,-5:14D   0 13 0  TTGTGGAGAAGGTGCTAGACAGGCG--------------AAGTGGAATATCTACTGAAGT 
   
1:50D   0 1 12  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG------------------------------ 
   
-9:22D   0 7 6  TTGTGGAGAAGGTGCTAGACA----------------------GGWATATCTACTGAAGT 
   
-17:24D   0 9 4  TTGTGGAGAAGGT------------------------ACAAGTGGAATATCTACTGAAGT 
   
-28:27D   0 13 0  TT---------------------------GTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-4:13I,1:3D   0 13 0  TTGTGGAGAAGGTGCTAGACAGGCGCGAGG---AGGGACAAGTGGAATATCTACTGAAGT 
   
-34:35D   0 13 0  -------------------------------TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-13:27D   0 13 0  TTGTGGAGAAGGTGCTA---------------------------GAATATCTACTGAAGT 
   
-4:2I,-1:5D   0 13 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTG-----GCGACAAGTGGAATATCTACTGAAGT 
   
-24:34D   0 0 13  TTGTGG----------------------------------AGTGGAATATCTACTGAAGT 
   
1:30I   0 13 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-28:39D   0 13 0  TT---------------------------------------GTGGAATATCTACTGAAGT 
   
1:46I   0 13 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGKTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-11:20D   0 13 0  TTGTGGAGAAGGTGCTAGA--------------------AAGTGGAATATCTACTGAAGT 
   
-1:3I,3:7D   0 13 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGCTT-------AAGTGGAATATCTACTGAAGT 
   
-12:10D   0 3 10  TTGTGGAGAAGGTGCTAG----------TTTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
2:22D   0 13 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGT----------------------GTGAAGT 
   
-16:20D   0 0 13  TTGTGGAGAAGGTG--------------------GGGACAAGTGGAATATCTACTGAAGT 
   
-5:1D   0 12 0  TTGTGGAGAAGGTGCTAGRCAGGCG-GTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-21:8I,-18:1D,-9:9D   0 12 0  AGGTGGCGAAGG-ACTATAAA---------TTAAGGGACAAGTGGAATATCTACTGAAGT 
   
10:1D   8 3 1  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGAC-AGTGGAATATCTACTGAAGT 
   
4:2D,7:12I   0 12 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGTCTA--GGTCTAGTGGAATATCTACTGAAGT 
   
-3:1I,1:2D   0 12 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG--AAGGGACAAGTGGAATATCTACTGAAGT 
   
-1:4I,1:1D   0 12 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGG-TAAGGGACAAGTGGAATATCTACTGAAGT 
   
-2:39I   0 10 2  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-2:1D,2:9I   0 0 12  TTGTGGAGAAGGTGCTAGACAGGCGCGT-GTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
-14:25D   0 12 0  TTGTGGAGAAGGTGCT-------------------------GTGGAATATCTACTGAAGT 
   
-3:39I,1:8I   0 12 0  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGT 
   
2:9D   0 1 11  TTGTGGAGAAGGTGCTAGACAGGCGCGTGGT---------AGTGGAATATCTACTGAAGT 
   
-6:2I,-4:7D   0 11 0  TTGTGGAGAAGGTGCTAGACAGGCCC-------AGGGACAAGTGGAATATCTACTGAAGT 
   
-6:16D   0 0 11  TTGTGGAGAAGGTGCT